References

Caswell, H. 2001. Matrix population models: construction, analysis, and interpretation. Sunderland, Mass.: Sinauer Associates.

Cormack, Richard M. 1964. “Estimates of Survival from the Sighting of Marked Animals.” Biometrika 51 (3/4): 429–38.

de Valpine, Perry, Christopher Paciorek, Daniel Turek, Nick Michaud, Cliff Anderson-Bergman, Fritz Obermeyer, Claudia Wehrhahn Cortes, Abel Rodrìguez, Duncan Temple Lang, and Sally Paganin. 2021. NIMBLE: MCMC, Particle Filtering, and Programmable Hierarchical Modeling (version 0.12.1). https://doi.org/10.5281/zenodo.1211190.

de Valpine, Perry, Daniel Turek, Christopher J Paciorek, Clifford Anderson-Bergman, Duncan Temple Lang, and Rastislav Bodik. 2017. “Programming with Models: Writing Statistical Algorithms for General Model Structures with Nimble.” Journal of Computational and Graphical Statistics 26 (2): 403–13.

Gimenez, Olivier, Vivien Rossi, Rémi Choquet, Camille Dehais, Blaise Doris, Hubert Varella, Jean-Pierre Vila, and Roger Pradel. 2007. “State-Space Modelling of Data on Marked Individuals.” Ecological Modelling 206 (3-4): 431–38.

Goldstein, Benjamin R., Daniel Turek, Lauren Ponisio, and Perry de Valpine. 2021. “nimbleEcology: Distributions for Ecological Models in nimble.” https://cran.r-project.org/package=nimbleEcology.

Jolly, George M. 1965. “Explicit Estimates from Capture-Recapture Data with Both Death and Immigration-Stochastic Model.” Biometrika 52 (1/2): 225–47.

Kéry, Marc, and Michael Schaub. 2011. Bayesian Population Analysis Using Winbugs: A Hierarchical Perspective. Academic Press.

Nater, Chloé R, Yngvild Vindenes, Per Aass, Diana Cole, Øystein Langangen, S Jannicke Moe, Atle Rustadbakken, Daniel Turek, Leif Asbjørn Vøllestad, and Torbjørn Ergon. 2020. “Size-and Stage-Dependence in Cause-Specific Mortality of Migratory Brown Trout.” Journal of Animal Ecology 89 (9): 2122–33.

Plard, Floriane, Rémi Fay, Marc Kéry, Aurélie Cohas, and Michael Schaub. 2019. “Integrated Population Models: Powerful Methods to Embed Individual Processes in Population Dynamics Models.” Ecology, e02715.

Schaub, Michael, and Marc Kery. 2021. Integrated Population Models: Theory and Ecological Applications with R and Jags. Academic Press.

Seber, George AF. 1965. “A Note on the Multiple-Recapture Census.” Biometrika 52 (1/2): 249–59.

Turek, Daniel, Perry de Valpine, and Christopher J Paciorek. 2016. “Efficient Markov Chain Monte Carlo Sampling for Hierarchical Hidden Markov Models.” Environmental and Ecological Statistics 23 (4): 549–64.